Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107452636 Ptep1.0/2.0 NW_024969646.1 742706 762667 + uncharacterized LOC107452636 aug3.g287 LOC107452636 0
LOC107449635 Ptep1.0/2.0 NW_024969901.1 2307 14102 + ras-related protein Rab-6A-like aug3.g2875 LOC107449635 0
LOC107449613 Ptep1.0/2.0 NW_024969901.1 18627 30619 - polymerase delta-interacting protein 3 aug3.g2874 LOC107449613 0
LOC107449630 Ptep1.0/2.0 NW_024969901.1 30714 41724 + E3 ubiquitin-protein ligase PPP1R11 aug3.g2873 LOC107449630 0
LOC107449632 Ptep1.0/2.0 NW_024969901.1 42209 54115 - ATP-dependent RNA helicase DDX51 aug3.g2872 LOC107449632,LOC107449629 0
LOC107449620 Ptep1.0/2.0 NW_024969901.1 54298 62912 + uncharacterized LOC107449620 aug3.g2871 LOC107449620 0
LOC107449619 Ptep1.0/2.0 NW_024969901.1 70232 88359 - F-box/WD repeat-containing protein 5 aug3.g2870 LOC107449619 0
LOC107441837 Ptep1.0/2.0 NW_024970143.1 1577109 1593274 + uncharacterized LOC107441837 aug3.g16171,aug3.g2878,aug3.g21716 LOC107441837 0
LOC107449653 Ptep1.0/2.0 NW_024970202.1 368423 570847 + uncharacterized LOC107449653 aug3.g2877 LOC107449653 0
LOC107449652 Ptep1.0/2.0 NW_024970202.1 577489 583941 - uncharacterized LOC107449652 aug3.g2878 LOC107449652 0
LOC107449657 Ptep1.0/2.0 NW_024970202.1 605258 624994 - serine/threonine-protein kinase tricornered aug3.g2879 LOC107449657 0
LOC122270819 Ptep1.0/2.0 NW_024970386.1 436540 454424 - uncharacterized LOC122270819 aug3.g2878,aug3.g27632 NA 0
LOC107449651 Ptep1.0/2.0 NW_024970497.1 129061 136793 + basic helix-loop-helix neural transcription factor TAP aug3.g2876 LOC107449651 0
LOC107442723 Ptep1.0/2.0 NW_024971162.1 135728 139748 - uncharacterized LOC107442723 aug3.g19745,aug3.g16788,aug3.g2875,aug3.g17006,aug3.g22665 LOC107442723 0
LOC122273382 Ptep1.0/2.0 NW_024975749.1 2313 5103 - ras-related protein RABB1b-like aug3.g2875 LOC107449635 0
15 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02