Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC110282551 Ptep1.0/2.0 NW_024969673.1 37906 40457 - fibrinogen alpha-1 chain-like aug3.g322 LOC110282551 0
LOC122270123 Ptep1.0/2.0 NW_024970062.1 1350308 1350823 - uncharacterized LOC122270123 aug3.g322,aug3.g24982,aug3.g21347,aug3.g19154,aug3.g18410,aug3.g9789,aug3.g24140,aug3.g5789,aug3.g9585,aug3.g17955,aug3.g10075,aug3.g27721,aug3.g23282,aug3.g20842,aug3.g585,aug3.g19946,aug3.g25069 NA 0
LOC122270724 Ptep1.0/2.0 NW_024970331.1 311975 321338 - uncharacterized LOC122270724 aug3.g3222 NA 0
LOC107450230 Ptep1.0/2.0 NW_024970404.1 220067 225241 + guanine nucleotide exchange factor MSS4 aug3.g3229 LOC107450230 0
LOC107450229 Ptep1.0/2.0 NW_024970404.1 226159 233367 - trafficking protein particle complex subunit 2-like protein aug3.g3228 LOC107450229 0
LOC107450226 Ptep1.0/2.0 NW_024970404.1 233472 250850 + ankyrin repeat and SAM domain-containing protein 6 aug3.g3227 LOC107450226 0
LOC107450243 Ptep1.0/2.0 NW_024970404.1 261157 297854 + DCC-interacting protein 13-alpha aug3.g3226 LOC107450243 0
LOC107450248 Ptep1.0/2.0 NW_024970404.1 302547 315737 - UDP-glucuronic acid decarboxylase 1 aug3.g3225 LOC107450248 0
LOC107450222 Ptep1.0/2.0 NW_024970404.1 320131 330189 + uncharacterized protein C18orf63-like aug3.g3224,aug3.g20977 LOC107450222,LOC107450235,LOC107449853 0
LOC107450231 Ptep1.0/2.0 NW_024970404.1 338840 392311 + uncharacterized LOC107450231 aug3.g3220,aug3.g3223 LOC107450231 0
LOC107437676 Ptep1.0/2.0 NW_024971979.1 3409 4041 + uncharacterized LOC107437676 aug3.g12525,aug3.g6905,aug3.g3222,aug3.g17798 LOC107437676 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02