Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107455071 Ptep1.0/2.0 NW_024969685.1 121905 174684 + homeobox protein six1b aug3.g325 LOC107455071 0
LOC107450301 Ptep1.0/2.0 NW_024970164.1 154035 179775 + very long-chain specific acyl-CoA dehydrogenase, mitochondrial aug3.g3250,aug3.g23105 LOC107438187,LOC107450301 0
LOC107450290 Ptep1.0/2.0 NW_024970164.1 183892 191040 - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 aug3.g3252 LOC107450290 0
LOC107450310 Ptep1.0/2.0 NW_024970164.1 209283 394023 - cell adhesion molecule 1 aug3.g3253 LOC107450310 0
LOC107450305 Ptep1.0/2.0 NW_024970164.1 418269 435044 - 39S ribosomal protein L37, mitochondrial aug3.g3254 LOC107450305 0
LOC107450306 Ptep1.0/2.0 NW_024970164.1 435118 461273 + uncharacterized LOC107450306 aug3.g3255 LOC107450306 0
LOC107450304 Ptep1.0/2.0 NW_024970164.1 493081 504010 + kxDL motif-containing protein 1 aug3.g3256 LOC107450304 0
LOC107450299 Ptep1.0/2.0 NW_024971025.1 202401 230889 - uncharacterized LOC107450299 aug3.g3258 LOC107439701,LOC107450299 0
LOC107450292 Ptep1.0/2.0 NW_024971025.1 236370 242527 - U3-aranetoxin-Ce1a aug3.g3257 LOC107450292 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02