Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107456161 Ptep1.0/2.0 NW_024969593.1 2009294 2030902 + amine oxidase [flavin-containing] B aug3.g361 LOC107456161 0
LOC122268783 Ptep1.0/2.0 NW_024969676.1 1483113 1485423 - uncharacterized LOC122268783 aug3.g3617 NA 0
LOC107436156 Ptep1.0/2.0 NW_024969720.1 17772 39225 - arylsulfatase I-like aug3.g25975,aug3.g3616 LOC107436156 0
LOC107455862 Ptep1.0/2.0 NW_024969764.1 437310 438215 - uncharacterized LOC107455862 aug3.g25146,aug3.g19343,aug3.g16463,aug3.g14400,aug3.g4758,aug3.g3610,aug3.g22235,aug3.g11358,aug3.g1785,aug3.g25419 LOC107455862 0
LOC107450800 Ptep1.0/2.0 NW_024969922.1 514856 515542 + ATP-dependent DNA helicase pif1-like aug3.g3618 LOC107450800 0
LOC107450801 Ptep1.0/2.0 NW_024969922.1 535349 536866 - uncharacterized LOC107450801 aug3.g3619,aug3.g21113 LOC107450801 0
LOC107450782 Ptep1.0/2.0 NW_024970062.1 1029183 1134252 + glutamate receptor ionotropic, kainate 1-like aug3.g3611 LOC107450782 0
LOC122270127 Ptep1.0/2.0 NW_024970062.1 1340468 1346317 - glutamate receptor ionotropic, kainate 3-like aug3.g3613 LOC107450783 0
LOC107450783 Ptep1.0/2.0 NW_024970062.1 1352433 1393516 - glutamate receptor ionotropic, kainate 2-like aug3.g3613 LOC107450783,LOC110282594 0
LOC107450784 Ptep1.0/2.0 NW_024970062.1 1396838 1433661 - glutamate receptor ionotropic, kainate 2 aug3.g3614 LOC107450784,LOC107450789 0
LOC107436440 Ptep1.0/2.0 NW_024970898.1 28971 30269 + uncharacterized LOC107436440 aug3.g11566,aug3.g6873,aug3.g9987,aug3.g3618,aug3.g19631,aug3.g11752 LOC107436440 0
LOC107450785 Ptep1.0/2.0 NW_024971501.1 9745 30108 + pre-mRNA-processing factor 17 aug3.g3615 LOC110282589,LOC107450785 0
LOC107450786 Ptep1.0/2.0 NW_024971501.1 35095 57414 + transmembrane protein 181 aug3.g3615 LOC107450786 0
LOC107452427 Ptep1.0/2.0 NW_024971646.1 51993 54639 + uncharacterized LOC107452427 aug3.g12147,aug3.g890,aug3.g27780,aug3.g536,aug3.g3617,aug3.g537,aug3.g6449,aug3.g7108 LOC107452427 0
LOC110283419 Ptep1.0/2.0 NW_024972505.1 10647 12050 - uncharacterized LOC110283419 aug3.g3617,aug3.g5030 LOC110283419 0
LOC122273226 Ptep1.0/2.0 NW_024974817.1 318 977 + ATP-dependent DNA helicase pif1-like aug3.g3618 NA 0
LOC122273588 Ptep1.0/2.0 NW_024977516.1 984 1349 - uncharacterized LOC122273588 aug3.g3617 NA 7e-171
17 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02