Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107438224 Ptep1.0/2.0 NW_024969612.1 1589159 1601123 + cell wall protein IFF6 aug3.g382 LOC107438224 0
LOC107451140 Ptep1.0/2.0 NW_024970368.1 11798 112685 - rho guanine nucleotide exchange factor 11 aug3.g3828 LOC107451140 0
LOC107451137 Ptep1.0/2.0 NW_024970368.1 118819 145948 - uncharacterized LOC107451137 aug3.g3828 LOC107451137 0
LOC107451156 Ptep1.0/2.0 NW_024970368.1 153123 173257 + ubiquitin-associated protein 1 aug3.g3826,aug3.g24823 LOC107451156 0
LOC107451145 Ptep1.0/2.0 NW_024970368.1 174561 221216 - alpha-aminoadipic semialdehyde synthase, mitochondrial aug3.g3825 LOC107451145 0
LOC122270785 Ptep1.0/2.0 NW_024970368.1 228974 234391 - uncharacterized LOC122270785 aug3.g3824 LOC107451139 0
LOC107451139 Ptep1.0/2.0 NW_024970368.1 234651 254212 - spindle assembly abnormal protein 6 homolog aug3.g3824 LOC107451139 0
LOC122270783 Ptep1.0/2.0 NW_024970368.1 254316 288299 + protein kinase C-binding protein 1-like aug3.g3823 LOC107451143 0
LOC107451143 Ptep1.0/2.0 NW_024970368.1 289804 340677 + uncharacterized LOC107451143 aug3.g3823 LOC107451143 0
LOC107451161 Ptep1.0/2.0 NW_024970368.1 345851 352064 - exosome complex component RRP41 aug3.g3822 LOC107451161 0
LOC107451147 Ptep1.0/2.0 NW_024970368.1 357542 383584 - uncharacterized LOC107451147 aug3.g3821 LOC107451147 0
LOC107451141 Ptep1.0/2.0 NW_024972537.1 18662 21145 + zinc finger MYM-type protein 1-like aug3.g3829 LOC107451141 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02