Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107439469 Ptep1.0/2.0 NW_024969612.1 751780 757057 - uncharacterized LOC107439469 aug3.g402 LOC107439469 0
LOC107451458 Ptep1.0/2.0 NW_024969925.1 593292 641955 + uncharacterized LOC107451458 aug3.g4020 LOC107451458 0
LOC107451457 Ptep1.0/2.0 NW_024969928.1 830563 831549 - putative proline-rich protein 21 aug3.g4021 LOC107451457 0
LOC107451460 Ptep1.0/2.0 NW_024969928.1 831716 920248 + craniofacial development protein 2-like aug3.g4022 LOC107451460 0
LOC107451466 Ptep1.0/2.0 NW_024969928.1 928090 949014 - dehydrogenase/reductase SDR family protein 7-like aug3.g4023 LOC107451466 0
LOC107451464 Ptep1.0/2.0 NW_024970103.1 528261 530087 + transcription factor HES-4-A-like aug3.g4026 LOC107451464 0
LOC110282162 Ptep1.0/2.0 NW_024970103.1 602094 604249 - protein maternal effect lethal 26 aug3.g4025 LOC110282162 0
LOC107451455 Ptep1.0/2.0 NW_024970103.1 617442 619490 - TD and POZ domain-containing protein 3-like aug3.g4024 LOC107451455 0
LOC107451470 Ptep1.0/2.0 NW_024970514.1 158607 167375 - F-box/SPRY domain-containing protein 1 aug3.g4029 LOC107451470 0
LOC107439678 Ptep1.0/2.0 NW_024984574.1 553 1463 + speckle-type POZ protein-like aug3.g23259,aug3.g20853,aug3.g20852,aug3.g4024,aug3.g19293,aug3.g4025,aug3.g21005,aug3.g19294 LOC107439678 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02