Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107449174 Ptep1.0/2.0 NW_024969600.1 2439964 2441197 + uncharacterized LOC107449174 aug3.g3807,aug3.g6710,aug3.g23413,aug3.g10434,aug3.g9006,aug3.g18819,aug3.g7971,aug3.g4300,aug3.g21761,aug3.g7554,aug3.g24958 LOC107449174 0
LOC107455863 Ptep1.0/2.0 NW_024969764.1 176721 252116 + hormone receptor 4 aug3.g25144,aug3.g4305 LOC107455863 0
LOC107451792 Ptep1.0/2.0 NW_024969937.1 275419 557576 + serine/threonine-protein kinase MRCK alpha aug3.g4309 LOC107451792 0
LOC107451793 Ptep1.0/2.0 NW_024969937.1 565384 592375 - uncharacterized LOC107451793 aug3.g4308 LOC107451793 0
LOC107451798 Ptep1.0/2.0 NW_024969937.1 592813 629081 + zinc finger C2HC domain-containing protein 1C aug3.g4307 LOC107451798 0
LOC107455046 Ptep1.0/2.0 NW_024970264.1 27971 28648 - protein ZBED8-like aug3.g4303 LOC107455046 0
LOC107455047 Ptep1.0/2.0 NW_024970264.1 166006 166377 + protein FAM200A-like aug3.g4303 LOC107455047 6e-162
LOC107451797 Ptep1.0/2.0 NW_024970409.1 26886 93939 + uncharacterized LOC107451797 aug3.g4304 LOC107451797 0
LOC107453153 Ptep1.0/2.0 NW_024971042.1 147905 148805 - protein FAM200A-like aug3.g24056,aug3.g4303,aug3.g8870 LOC107453153 0
LOC122273225 Ptep1.0/2.0 NW_024974813.1 4765 5291 - protein ZBED8-like aug3.g4303 NA 0
LOC122273275 Ptep1.0/2.0 NW_024975154.1 3757 4299 + protein ZBED8-like aug3.g4303 NA 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02