Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107453448 Ptep1.0/2.0 NW_024969595.1 368979 378195 - uncharacterized protein C1orf198 homolog aug3.g5494 LOC107453448 0
LOC107453446 Ptep1.0/2.0 NW_024969595.1 379839 394604 + uncharacterized LOC107453446 aug3.g5493 LOC107453446 1e-176
LOC107453452 Ptep1.0/2.0 NW_024969595.1 395053 411860 - embryonic polarity protein dorsal aug3.g5492 LOC107453452 0
LOC107453449 Ptep1.0/2.0 NW_024970102.1 53263 134196 + uncharacterized LOC107453449 aug3.g5496 LOC107453449 0
LOC107453443 Ptep1.0/2.0 NW_024970102.1 147067 186572 - ras guanyl-releasing protein 3 aug3.g5497 LOC107453443 0
LOC107453451 Ptep1.0/2.0 NW_024970102.1 212488 241585 + DNA repair protein REV1 aug3.g5498 LOC107453451 0
LOC107453447 Ptep1.0/2.0 NW_024970102.1 247030 311279 - sprouty-related, EVH1 domain-containing protein 2 aug3.g5499 LOC107453447 0
LOC107443848 Ptep1.0/2.0 NW_024970584.1 109870 116993 - lysine-specific demethylase 3A-like aug3.g549,aug3.g550 LOC107443848 0
LOC107453437 Ptep1.0/2.0 NW_024971067.1 82285 109621 - putative tyrosine-protein kinase Wsck aug3.g5491 LOC107453437 0
LOC107453439 Ptep1.0/2.0 NW_024971067.1 125011 139489 - uncharacterized LOC107453439 aug3.g5490 LOC107453439 0
LOC122273723 Ptep1.0/2.0 NW_024979127.1 607 1725 + uncharacterized LOC122273723 aug3.g5492 NA 3e-180
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02