Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107453562 Ptep1.0/2.0 NW_024969757.1 156469 157146 + lisH domain-containing protein C1711.05-like aug3.g5580 LOC107453562 0
LOC107453565 Ptep1.0/2.0 NW_024969757.1 179399 193868 + TD and POZ domain-containing protein 4 aug3.g5581 LOC107453565 0
LOC107453564 Ptep1.0/2.0 NW_024969757.1 199032 209584 - E3 ubiquitin-protein ligase Hakai aug3.g5582 LOC107453564 0
LOC107453563 Ptep1.0/2.0 NW_024969757.1 209681 219140 + helicase POLQ-like aug3.g5583 LOC107453563 2e-87
LOC107443843 Ptep1.0/2.0 NW_024970526.1 265943 324871 + uncharacterized LOC107443843 aug3.g558 LOC107443843 0
LOC107455141 Ptep1.0/2.0 NW_024971121.1 33013 149593 + pseudogene aug3.g6852,aug3.g6853,aug3.g5152,aug3.g13817,aug3.g27437,aug3.g2443,aug3.g815,aug3.g18721,aug3.g27682,aug3.g6591,aug3.g9034,aug3.g23308,aug3.g8240,aug3.g11539,aug3.g15522,aug3.g5586,aug3.g5083,aug3.g10191,aug3.g3609,aug3.g22834,aug3.g17162,aug3.g27259,aug LOC107455141 0
LOC110283045 Ptep1.0/2.0 NW_024981816.1 630 1556 - uncharacterized LOC110283045 aug3.g17621,aug3.g5585 LOC110283045 0
7 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02