Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269673 Ptep1.0/2.0 NW_024969893.1 292563 293205 - protein transport protein Sec24A-like aug3.g5615 NA 4e-174
LOC107443876 Ptep1.0/2.0 NW_024969903.1 27759 57703 + ribonucleoside-diphosphate reductase large subunit aug3.g562,aug3.g22848,aug3.g561 LOC107443876,LOC110283384 0
LOC107453597 Ptep1.0/2.0 NW_024969905.1 484247 573318 + fibroblast growth factor 8 aug3.g5611 LOC107453597 0
LOC107453598 Ptep1.0/2.0 NW_024969905.1 631171 661560 - high affinity copper uptake protein 1 aug3.g5612 LOC107453598 0
LOC107453600 Ptep1.0/2.0 NW_024969905.1 667876 749560 - transient receptor potential cation channel subfamily M member 1 aug3.g5613 LOC107453600 0
LOC107453604 Ptep1.0/2.0 NW_024969989.1 72497 73879 + FMRFamide-activated amiloride-sensitive sodium channel-like aug3.g5620,aug3.g5619 LOC107453604 0
LOC107453602 Ptep1.0/2.0 NW_024969989.1 79959 81855 + degenerin mec-10-like aug3.g5618 LOC107453602 0
LOC107453612 Ptep1.0/2.0 NW_024969989.1 108237 160230 + protein Wnt-8b-like aug3.g5617 LOC107453612 0
LOC107453611 Ptep1.0/2.0 NW_024969989.1 165603 171415 - rRNA-processing protein UTP23 homolog aug3.g5616 LOC107453611 0
LOC107453601 Ptep1.0/2.0 NW_024969989.1 171471 222480 + protein transport protein Sec24A aug3.g5615 LOC107453601 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02