Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269452 Ptep1.0/2.0 NW_024969823.1 5998 26351 - uncharacterized LOC122269452 aug3.g5701,aug3.g24539 NA 0
LOC107453701 Ptep1.0/2.0 NW_024969823.1 55411 148082 + matrix metalloproteinase-21 aug3.g5702 LOC107453701 0
LOC107453694 Ptep1.0/2.0 NW_024969823.1 153140 160181 - ferritin, middle subunit aug3.g5703 LOC107453694 0
LOC107453696 Ptep1.0/2.0 NW_024969823.1 171993 207951 - monocarboxylate transporter 12 aug3.g5704 LOC107453696 0
LOC107453697 Ptep1.0/2.0 NW_024969823.1 237833 257529 + uncharacterized LOC107453697 aug3.g5705 LOC107453697 0
LOC107453700 Ptep1.0/2.0 NW_024969823.1 259575 323095 - lymphocyte cytosolic protein 2 aug3.g5706 LOC107453700 0
LOC107453692 Ptep1.0/2.0 NW_024969823.1 323399 339606 + transmembrane anterior posterior transformation protein 1 aug3.g5707,aug3.g27082 LOC107453692 0
LOC107443883 Ptep1.0/2.0 NW_024969903.1 200267 598972 + potassium voltage-gated channel subfamily H member 7 aug3.g570 LOC107443883 0
LOC107442021 Ptep1.0/2.0 NW_024969980.1 25627 28652 + uncharacterized LOC107442021 aug3.g5707,aug3.g6344,aug3.g5708 LOC107442021 0
LOC122270226 Ptep1.0/2.0 NW_024970103.1 244946 247088 + uncharacterized LOC122270226 aug3.g5707 NA 4e-51
LOC122268234 Ptep1.0/2.0 NW_024974333.1 23257 24013 - uncharacterized LOC122268234 aug3.g5700 LOC107453695 0
LOC122273673 Ptep1.0/2.0 NW_024978424.1 2665 3495 + uncharacterized LOC122273673 aug3.g5707 NA 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02