Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268911 Ptep1.0/2.0 NW_024969702.1 2130980 2132423 + uncharacterized LOC122268911 aug3.g5750 NA 5e-157
LOC107453756 Ptep1.0/2.0 NW_024970156.1 318748 337886 - electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial aug3.g5759 LOC107453756 0
LOC107453755 Ptep1.0/2.0 NW_024970156.1 337934 343395 + Fanconi anemia group I protein-like aug3.g5758 LOC107453755 0
LOC107453760 Ptep1.0/2.0 NW_024970156.1 353075 404187 - GAS2-like protein 1 aug3.g5757 LOC107453760 0
LOC107453767 Ptep1.0/2.0 NW_024970156.1 429407 446950 + tetratricopeptide repeat protein 14 aug3.g5756 LOC107453767 0
LOC107453764 Ptep1.0/2.0 NW_024970156.1 447406 464961 - probable ATP-dependent RNA helicase pitchoune aug3.g5755 LOC107453764 0
LOC107453758 Ptep1.0/2.0 NW_024970156.1 476294 495340 - ATP-dependent RNA helicase DDX18 aug3.g5754 LOC107453758 0
LOC107453757 Ptep1.0/2.0 NW_024970156.1 495488 513930 + ATP-dependent RNA helicase DDX18 aug3.g5753 LOC107453757 0
LOC107443916 Ptep1.0/2.0 NW_024970165.1 655784 693553 - V-type proton ATPase subunit S1 aug3.g575 LOC107443916 0
LOC107446723 Ptep1.0/2.0 NW_024970593.1 238923 264135 - uncharacterized LOC107446723 aug3.g5751 LOC107446723 8e-51
LOC122271758 Ptep1.0/2.0 NW_024971128.1 15839 26551 + uncharacterized LOC122271758 aug3.g5751 NA 8e-49
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02