Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107443977 Ptep1.0/2.0 NW_024969708.1 67197 220298 + uncharacterized LOC107443977 aug3.g600 LOC107443977 0
LOC122269999 Ptep1.0/2.0 NW_024970005.1 261953 265664 - uncharacterized LOC122269999 aug3.g6009 NA 5e-180
LOC107454081 Ptep1.0/2.0 NW_024970005.1 271677 340492 - formin-like protein aug3.g6008 LOC107454081 0
LOC107454084 Ptep1.0/2.0 NW_024970005.1 340910 357663 + citrate synthase, mitochondrial aug3.g6007 LOC107454084 0
LOC107454093 Ptep1.0/2.0 NW_024970005.1 358183 364557 - RING-box protein 1A aug3.g6006 LOC107454093 0
LOC107454091 Ptep1.0/2.0 NW_024970005.1 364689 404643 + cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 aug3.g6005,aug3.g27006 LOC107454091 0
LOC122270875 Ptep1.0/2.0 NW_024970420.1 432076 435792 - uncharacterized LOC122270875 aug3.g6008 NA 2e-103
LOC122271663 Ptep1.0/2.0 NW_024971034.1 71431 74718 + uncharacterized LOC122271663 aug3.g6004 NA 0
LOC107454068 Ptep1.0/2.0 NW_024971034.1 82787 116420 + sodium/glucose cotransporter 4 aug3.g6004 LOC107454068 0
LOC107454072 Ptep1.0/2.0 NW_024971034.1 122855 143166 - Golgi SNAP receptor complex member 1 aug3.g6003 LOC107454072 0
LOC107454069 Ptep1.0/2.0 NW_024971643.1 11014 19051 - uncharacterized LOC107454069 aug3.g6001 LOC107454069 0
LOC122272216 Ptep1.0/2.0 NW_024971643.1 28304 40188 - uncharacterized LOC122272216 aug3.g6002 NA 0
LOC107454070 Ptep1.0/2.0 NW_024971643.1 48649 54441 - uncharacterized LOC107454070 aug3.g6002 LOC107454070 2e-119
LOC122272766 Ptep1.0/2.0 NW_024972770.1 2597 9817 - formin-like protein aug3.g6008 NA 0
LOC122273271 Ptep1.0/2.0 NW_024975110.1 668 4177 + uncharacterized LOC122273271 aug3.g6009 NA 0
15 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02