Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107454115 Ptep1.0/2.0 NW_024969677.1 1199597 1215026 - carbohydrate sulfotransferase 5-like aug3.g6049 LOC107454115 0
LOC107454113 Ptep1.0/2.0 NW_024969677.1 1273435 1320973 - doublesex- and mab-3-related transcription factor A2 aug3.g6048 LOC107454113 0
LOC107454114 Ptep1.0/2.0 NW_024969677.1 1370963 1401827 - doublesex- and mab-3-related transcription factor 3 aug3.g6047,aug3.g6046 LOC107454114 0
LOC107442912 Ptep1.0/2.0 NW_024969705.1 407829 436886 + sec1 family domain-containing protein 2 aug3.g16922,aug3.g22679,aug3.g6044 LOC107442912,LOC107445166 0
LOC107454112 Ptep1.0/2.0 NW_024969705.1 485221 492601 + uncharacterized LOC107454112 aug3.g6044 LOC107454112 0
LOC107454107 Ptep1.0/2.0 NW_024969705.1 507467 574151 + uncharacterized LOC107454107 aug3.g6043 LOC107454107 0
LOC107454108 Ptep1.0/2.0 NW_024969705.1 575808 609950 - vacuolar protein sorting-associated protein 18 homolog aug3.g6042 LOC107454108 0
LOC107454111 Ptep1.0/2.0 NW_024969705.1 610159 611401 + mitochondrial ribosome-associated GTPase 2 aug3.g6041 LOC107454111 0
LOC107454104 Ptep1.0/2.0 NW_024969705.1 617128 654945 + zinc transporter 1 aug3.g6040 LOC107454104 0
LOC107443980 Ptep1.0/2.0 NW_024969708.1 350628 390753 - oxidative stress-induced growth inhibitor 1 aug3.g604 LOC107443980 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02