Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444083 Ptep1.0/2.0 NW_024969971.1 60454 79888 + rab5 GDP/GTP exchange factor aug3.g617 LOC107444083 0
LOC107454305 Ptep1.0/2.0 NW_024970575.1 177352 295711 + protein TANC2 aug3.g6170 LOC107454305 0
LOC107454317 Ptep1.0/2.0 NW_024971057.1 538 12479 + uncharacterized LOC107454317 aug3.g6176 LOC107454317 0
LOC107454314 Ptep1.0/2.0 NW_024971057.1 14166 39672 + monocarboxylate transporter 12 aug3.g6177 LOC107454314 0
LOC107454313 Ptep1.0/2.0 NW_024971057.1 39705 60365 + monocarboxylate transporter 12-B aug3.g6178 LOC107454313 0
LOC107454315 Ptep1.0/2.0 NW_024971057.1 109416 128179 + monocarboxylate transporter 12-like aug3.g6181,aug3.g6179 LOC107454315,LOC107454316 0
LOC122272105 Ptep1.0/2.0 NW_024971498.1 20737 22257 - monocarboxylate transporter 12-like aug3.g6179 NA 0
LOC122272273 Ptep1.0/2.0 NW_024971717.1 4184 5899 - uncharacterized LOC122272273 aug3.g6174 NA 0
LOC107454320 Ptep1.0/2.0 NW_024971717.1 64544 132130 - uncharacterized LOC107454320 aug3.g6175 LOC107454320 0
LOC122272780 Ptep1.0/2.0 NW_024972807.1 138 975 - uncharacterized LOC122272780 aug3.g6172 NA 0
LOC122272779 Ptep1.0/2.0 NW_024972807.1 1294 2578 - uncharacterized LOC122272779 aug3.g6172 NA 0
LOC122274120 Ptep1.0/2.0 NW_024993188.1 244 1328 - rab5 GDP/GTP exchange factor-like aug3.g617 NA 8e-132
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02