Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107451854 Ptep1.0/2.0 NW_024969642.1 232695 383779 - neural-cadherin aug3.g15767,aug3.g6373 LOC107451854 0
LOC107444172 Ptep1.0/2.0 NW_024969828.1 657952 712063 + kinesin heavy chain aug3.g637,aug3.g638,aug3.g24899,aug3.g3243 LOC107444172 0
LOC107444186 Ptep1.0/2.0 NW_024969828.1 718031 729734 - motile sperm domain-containing protein 1 aug3.g637 LOC107444186 0
LOC107439732 Ptep1.0/2.0 NW_024969918.1 304565 305599 - histone-lysine N-methyltransferase SETMAR-like aug3.g26886,aug3.g4814,aug3.g6378,aug3.g19902,aug3.g7639,aug3.g10386,aug3.g24814,aug3.g14434 LOC107439732 0
LOC122270237 Ptep1.0/2.0 NW_024970105.1 428146 429706 + uncharacterized LOC122270237 aug3.g6378 NA 0
LOC107454545 Ptep1.0/2.0 NW_024970557.1 74473 186229 - neural-cadherin aug3.g6370 LOC107454545 0
LOC107442593 Ptep1.0/2.0 NW_024970577.1 489839 490300 + histone-lysine N-methyltransferase SETMAR-like aug3.g6378 LOC107442593 0
LOC107454553 Ptep1.0/2.0 NW_024970666.1 18852 41920 - glyoxylate reductase/hydroxypyruvate reductase aug3.g6374,aug3.g21334 LOC107454553,LOC107450842 0
LOC107454550 Ptep1.0/2.0 NW_024970666.1 42112 160091 + PH and SEC7 domain-containing protein aug3.g6375,aug3.g6376 LOC107454550 0
LOC107454552 Ptep1.0/2.0 NW_024970666.1 170622 245926 - uncharacterized LOC107454552 aug3.g6377 LOC107454552 0
LOC107454551 Ptep1.0/2.0 NW_024970939.1 138005 139555 - cholinesterase-like aug3.g6379 LOC107454551 0
LOC122273174 Ptep1.0/2.0 NW_024974539.1 2061 6415 - glyoxylate reductase/hydroxypyruvate reductase-like aug3.g6374 LOC107454553 5e-87
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02