Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107454749 Ptep1.0/2.0 NW_024969686.1 45719 77725 + uncharacterized LOC107454749 aug3.g6506 LOC107454749 0
LOC107454748 Ptep1.0/2.0 NW_024969686.1 47002 54425 - chondroitin sulfate synthase 1 aug3.g6505 LOC107454748 0
LOC107454744 Ptep1.0/2.0 NW_024969686.1 82099 101826 - zinc metalloproteinase nas-13-like aug3.g6507 LOC107454744 0
LOC107454745 Ptep1.0/2.0 NW_024969686.1 114354 141232 - uncharacterized LOC107454745 aug3.g6507 LOC107454745 0
LOC107454750 Ptep1.0/2.0 NW_024969686.1 148222 189211 + uncharacterized LOC107454750 aug3.g6508 LOC107454750 0
LOC122268826 Ptep1.0/2.0 NW_024969686.1 197203 198216 - mu-type opioid receptor-like aug3.g6509 NA 0
LOC122268827 Ptep1.0/2.0 NW_024969686.1 218043 219032 - mu-type opioid receptor-like aug3.g6509 NA 0
LOC107454731 Ptep1.0/2.0 NW_024969796.1 685664 688220 - dynein regulatory complex protein 11-like aug3.g6501 LOC107454731 0
LOC107454734 Ptep1.0/2.0 NW_024969796.1 773654 795938 + transcriptional repressor protein YY1 aug3.g6503 LOC107454734 0
LOC107454743 Ptep1.0/2.0 NW_024969796.1 798099 812750 - nucleoporin p54 aug3.g6504,aug3.g14357 LOC107454743 0
LOC107444182 Ptep1.0/2.0 NW_024969828.1 293571 304064 - 60S ribosomal protein L18a aug3.g650 LOC107444182 0
LOC122274074 Ptep1.0/2.0 NW_024990429.1 848 1409 + alpha-1A adrenergic receptor-like aug3.g6509 NA 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02