Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107436355 Ptep1.0/2.0 NW_024969815.1 763066 807749 - oocyte zinc finger protein XlCOF6.1 aug3.g18966,aug3.g16370,aug3.g11139,aug3.g23931,aug3.g10099,aug3.g19028,aug3.g26680,aug3.g658,aug3.g6866,aug3.g3777,aug3.g13767,aug3.g1246,aug3.g20365,aug3.g12813,aug3.g18681,aug3.g5858,aug3.g20791,aug3.g17997,aug3.g11223,aug3.g15649,aug3.g3781,aug3.g2204 LOC107454207,LOC107436355 0
LOC107456921 Ptep1.0/2.0 NW_024969987.1 460935 531977 + CD9 antigen aug3.g8947,aug3.g6589,aug3.g15183,aug3.g14221,aug3.g16461,aug3.g9719,aug3.g16641,aug3.g11079 LOC107456921 0
LOC107454842 Ptep1.0/2.0 NW_024970307.1 727696 944820 - receptor-type guanylate cyclase Gyc76C aug3.g8124,aug3.g6586 NA 0
LOC107454836 Ptep1.0/2.0 NW_024970460.1 11295 55800 + uncharacterized LOC107454836 aug3.g6581 LOC107454836 0
LOC107454838 Ptep1.0/2.0 NW_024970460.1 61410 66831 - serine-rich adhesin for platelets aug3.g6582 LOC107454838 0
LOC107454829 Ptep1.0/2.0 NW_024970460.1 77097 256770 + spectrin beta chain, non-erythrocytic 2 aug3.g6584,aug3.g6583 LOC107454829 0
LOC107454830 Ptep1.0/2.0 NW_024970460.1 226470 235104 - ketimine reductase mu-crystallin aug3.g6585 LOC107454830 0
LOC107450614 Ptep1.0/2.0 NW_024971425.1 57926 72322 - uncharacterized LOC107450614 aug3.g658 LOC107450614 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02