Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107455118 Ptep1.0/2.0 NW_024969752.1 5557342 5888120 + complexin-like aug3.g6830 LOC107455118 0
LOC107455117 Ptep1.0/2.0 NW_024969752.1 5904981 5948707 - DNA ligase 1 aug3.g6830,aug3.g6831,aug3.g17823 LOC107455117 0
LOC107455126 Ptep1.0/2.0 NW_024969933.1 698322 719202 - putative ammonium transporter 3 aug3.g6839 LOC107455126 0
LOC107438734 Ptep1.0/2.0 NW_024970068.1 51087 76069 + pseudogene aug3.g25316,aug3.g4225,aug3.g8566,aug3.g4223,aug3.g23367,aug3.g6833,aug3.g3011,aug3.g13548,aug3.g26700,aug3.g7541,aug3.g17201,aug3.g12975,aug3.g3889,aug3.g2792 LOC107438734 0
LOC107455136 Ptep1.0/2.0 NW_024970303.1 268667 366032 - inaD-like protein aug3.g6832 LOC107455136 0
LOC107444339 Ptep1.0/2.0 NW_024970581.1 104718 115741 + intraflagellar transport protein 22 homolog aug3.g683 LOC107444339 1e-172
6 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02