Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269715 Ptep1.0/2.0 NW_024969613.1 1510399 1511271 - general transcription factor II-I repeat domain-containing protein 2B-like aug3.g6906 NA 0
LOC107455203 Ptep1.0/2.0 NW_024970021.1 1084 286328 + tight junction protein ZO-1 aug3.g6901,aug3.g13060 LOC107455203 0
LOC107455205 Ptep1.0/2.0 NW_024970021.1 287529 295604 - isatin hydrolase aug3.g6900 LOC107455205 0
LOC122270478 Ptep1.0/2.0 NW_024970200.1 365799 367607 + general transcription factor II-I repeat domain-containing protein 2B-like aug3.g6906 NA 0
LOC107437005 Ptep1.0/2.0 NW_024970249.1 17780 24429 + general transcription factor II-I repeat domain-containing protein 2B-like aug3.g6906,aug3.g26515,aug3.g11964,aug3.g12925 LOC107437005 0
LOC122271128 Ptep1.0/2.0 NW_024970585.1 177824 179632 - general transcription factor II-I repeat domain-containing protein 2B-like aug3.g6906 NA 0
LOC107455208 Ptep1.0/2.0 NW_024970784.1 1320 2803 + general transcription factor II-I repeat domain-containing protein 2B-like aug3.g6906 LOC107455208 0
LOC107455211 Ptep1.0/2.0 NW_024970784.1 5148 27037 + glutamate dehydrogenase, mitochondrial aug3.g6907 LOC107455211 0
LOC107455212 Ptep1.0/2.0 NW_024970784.1 51597 119448 - netrin-1 aug3.g6908 LOC107455212 0
LOC107444340 Ptep1.0/2.0 NW_024971013.1 37355 75502 + neuronal acetylcholine receptor subunit alpha-7-like aug3.g690 LOC107444340 0
LOC122271642 Ptep1.0/2.0 NW_024971013.1 92495 111549 + neuronal acetylcholine receptor subunit alpha-7-like aug3.g690 LOC107444340 0
LOC107446870 Ptep1.0/2.0 NW_024971339.1 9642 72433 + syntaxin-8-like aug3.g19446,aug3.g6909 LOC107446870 0
LOC107437676 Ptep1.0/2.0 NW_024971979.1 3409 4041 + uncharacterized LOC107437676 aug3.g12525,aug3.g6905,aug3.g3222,aug3.g17798 LOC107437676 0
LOC122268708 Ptep1.0/2.0 NW_025029436.1 24875 42317 - uncharacterized LOC122268708 aug3.g6904 NA 0
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02