Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444379 Ptep1.0/2.0 NW_024969602.1 837329 927628 - extracellular matrix organizing protein FRAS1 aug3.g701,aug3.g703,aug3.g702 LOC107444381,LOC107444377,LOC107444378,LOC107444379 0
LOC107436941 Ptep1.0/2.0 NW_024969633.1 1050456 1078594 - cAMP-dependent protein kinase inhibitor gamma aug3.g7039 LOC107436941 0
LOC107436931 Ptep1.0/2.0 NW_024969633.1 1286885 1290815 - uncharacterized LOC107436931 aug3.g7036 LOC107436931 4e-161
LOC107436930 Ptep1.0/2.0 NW_024969633.1 1368541 1379902 - uncharacterized histidine-rich protein DDB_G0274557-like aug3.g7034 LOC107436930 0
LOC107436940 Ptep1.0/2.0 NW_024969633.1 1422431 1429406 + NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial aug3.g7033 LOC107436940 0
LOC107436938 Ptep1.0/2.0 NW_024969633.1 1436537 1444291 + uncharacterized protein C18orf19 homolog B aug3.g7032 LOC107436938 0
LOC107440110 Ptep1.0/2.0 NW_024969675.1 737933 764627 - 40-kDa huntingtin-associated protein aug3.g14271,aug3.g9818,aug3.g14231,aug3.g12670,aug3.g7979,aug3.g20627,aug3.g14384,aug3.g1350,aug3.g27662,aug3.g8721,aug3.g20462,aug3.g23430,aug3.g7037,aug3.g26629,aug3.g5368,aug3.g8439,aug3.g9624,aug3.g7249,aug3.g5894,aug3.g15802,aug3.g6860,aug3.g2105,aug LOC107440110 0
LOC107436148 Ptep1.0/2.0 NW_024969887.1 791750 818687 + DNA-directed RNA polymerase III subunit RPC5 aug3.g7030 LOC107436148 0
LOC107436147 Ptep1.0/2.0 NW_024969887.1 828089 898485 + Usher syndrome type-1G protein homolog aug3.g7030,aug3.g23116 LOC107436147 0
LOC122273620 Ptep1.0/2.0 NW_024977821.1 308 3318 - uncharacterized LOC122273620 aug3.g7030 NA 1e-127
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02