Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444386 Ptep1.0/2.0 NW_024969602.1 786013 787376 + zinc finger protein 596 aug3.g706 LOC107444386 0
LOC107437696 Ptep1.0/2.0 NW_024969619.1 209866 331225 + synaptogenesis protein syg-2 aug3.g7066 LOC107437696 0
LOC107437697 Ptep1.0/2.0 NW_024969619.1 341061 376100 + sentrin-specific protease 1 aug3.g7067 LOC107437697 0
LOC122270074 Ptep1.0/2.0 NW_024969619.1 387089 388516 - zonadhesin-like aug3.g7068 NA 0
LOC107437698 Ptep1.0/2.0 NW_024969619.1 433000 457456 + uncharacterized LOC107437698 aug3.g7069 LOC107437698 0
LOC107436952 Ptep1.0/2.0 NW_024969633.1 10645 84887 - potassium channel subfamily K member 4-like aug3.g7062,aug3.g7061 LOC107436952 0
LOC107436951 Ptep1.0/2.0 NW_024969633.1 93019 129078 + nidogen aug3.g7060 LOC107436951 0
LOC107436953 Ptep1.0/2.0 NW_024971264.1 5371 20447 + probable 39S ribosomal protein L45, mitochondrial aug3.g7063 LOC107436953 0
LOC107436929 Ptep1.0/2.0 NW_024971264.1 26579 60307 + RNA exonuclease 1 homolog aug3.g7064 LOC107436929 0
LOC107436936 Ptep1.0/2.0 NW_024971264.1 72284 85613 - uncharacterized LOC107436936 aug3.g7065 LOC107436936 0
LOC107436937 Ptep1.0/2.0 NW_024971264.1 98423 114618 - octopamine receptor 1-like aug3.g7065 LOC107436937 0
LOC122273335 Ptep1.0/2.0 NW_024975541.1 2107 3853 - RNA exonuclease 1 homolog aug3.g7064 NA 1e-135
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02