Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445714 Ptep1.0/2.0 NW_024969638.1 2361229 2364140 + speckle-type POZ protein B aug3.g1140,aug3.g15658,aug3.g15659,aug3.g7185 LOC107445714 0
LOC107444439 Ptep1.0/2.0 NW_024969666.1 750984 766580 + UPF0472 protein C16orf72 homolog aug3.g717,aug3.g718 LOC107444439 0
LOC107438558 Ptep1.0/2.0 NW_024969942.1 1368328 1378994 - uncharacterized LOC107438558 aug3.g7186 LOC107438558 1e-46
LOC110282116 Ptep1.0/2.0 NW_024970256.1 51889 347372 + uncharacterized LOC110282116 aug3.g7184 LOC110282116 0
LOC107440417 Ptep1.0/2.0 NW_024970256.1 349146 404962 + adhesion G protein-coupled receptor B1 aug3.g7184 LOC107440417 0
LOC122270579 Ptep1.0/2.0 NW_024970256.1 437241 437840 - speckle-type POZ protein-like aug3.g7185 NA 0
LOC107440935 Ptep1.0/2.0 NW_024970457.1 136486 175800 + clavesin-2 aug3.g7188 LOC107440935 0
LOC107440950 Ptep1.0/2.0 NW_024970457.1 180572 193984 - SET domain-containing protein 4 aug3.g7189 LOC107440950 0
LOC107440415 Ptep1.0/2.0 NW_024971325.1 4294 27347 + uncharacterized LOC107440415 aug3.g7186,aug3.g3389,aug3.g21939 LOC107440415 0
LOC107440418 Ptep1.0/2.0 NW_024971325.1 24310 108644 - receptor-type tyrosine-protein phosphatase kappa aug3.g7187 LOC107440418 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02