Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444546 Ptep1.0/2.0 NW_024969661.1 835927 862227 - protein odr-4 homolog aug3.g744 LOC107440554,LOC107444546 0
LOC107444070 Ptep1.0/2.0 NW_024969813.1 144920 176284 - lysosomal acid phosphatase aug3.g7448 LOC107444070 0
LOC107444062 Ptep1.0/2.0 NW_024969813.1 197819 204740 - gastrula zinc finger protein XlCGF71.1 aug3.g7447 LOC107444062 0
LOC107444045 Ptep1.0/2.0 NW_024969813.1 218047 237958 + transketolase-like protein 2 aug3.g7446 LOC107444045 0
LOC107444033 Ptep1.0/2.0 NW_024969813.1 240712 331776 - sodium- and chloride-dependent GABA transporter 3 aug3.g7445 LOC107444033 0
LOC107444042 Ptep1.0/2.0 NW_024969813.1 343827 352997 - 3-hydroxyacyl-CoA dehydrogenase type-2 aug3.g7444 LOC107444042 0
LOC107444043 Ptep1.0/2.0 NW_024969813.1 353011 362428 + 3-hydroxyacyl-CoA dehydrogenase type-2 aug3.g7443 LOC107444043 0
LOC107444063 Ptep1.0/2.0 NW_024969813.1 380931 392021 + uncharacterized LOC107444063 aug3.g7442 LOC107444063 0
LOC107444031 Ptep1.0/2.0 NW_024969813.1 405861 429740 - potassium channel subfamily K member 10-like aug3.g7441 LOC107444031 0
LOC107444030 Ptep1.0/2.0 NW_024969813.1 438690 450287 - potassium channel subfamily K member 16-like aug3.g7440 LOC107444030 0
LOC107436718 Ptep1.0/2.0 NW_024970694.1 96274 107335 + uncharacterized LOC107436718 aug3.g22955,aug3.g7449 LOC107436718 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02