Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268864 Ptep1.0/2.0 NW_024969693.1 1412675 1415494 - uncharacterized LOC122268864 aug3.g8322 NA 3e-112
LOC107437183 Ptep1.0/2.0 NW_024969741.1 806823 812755 + zinc finger MYM-type protein 1-like aug3.g5715,aug3.g8324,aug3.g5903,aug3.g16879,aug3.g19070 LOC107437183 0
LOC122269232 Ptep1.0/2.0 NW_024969768.1 955723 956661 + jerky protein homolog aug3.g8322 NA 0
LOC107448963 Ptep1.0/2.0 NW_024970027.1 856557 901713 - cytochrome P450 4V2-like aug3.g2500,aug3.g8329 LOC107448963 0
LOC122270598 Ptep1.0/2.0 NW_024970268.1 453721 454740 + uncharacterized LOC122270598 aug3.g8321 NA 8e-65
LOC122270656 Ptep1.0/2.0 NW_024970302.1 344894 345630 - pseudogene aug3.g8324 NA 6e-175
LOC107453970 Ptep1.0/2.0 NW_024970316.1 308608 309828 - zinc finger MYM-type protein 1 aug3.g8324 LOC107453970 0
LOC107446724 Ptep1.0/2.0 NW_024970593.1 287926 288534 - zinc finger MYM-type protein 1-like aug3.g8324 LOC107446724 0
LOC107447304 Ptep1.0/2.0 NW_024970908.1 166970 191223 + transformation/transcription domain-associated protein aug3.g10065,aug3.g8323,aug3.g19686 LOC107447304 6e-141
LOC107456112 Ptep1.0/2.0 NW_024971134.1 10728 143488 + YLP motif-containing protein 1 aug3.g8321 LOC107456112 0
LOC107456111 Ptep1.0/2.0 NW_024971134.1 12483 13925 - jerky protein-like aug3.g8322,aug3.g25132,aug3.g25131 LOC107456111 0
LOC107443713 Ptep1.0/2.0 NW_024971234.1 65472 104669 + cytochrome P450 4V2-like aug3.g17412,aug3.g8326,aug3.g22001,aug3.g8327,aug3.g17411 LOC107443713 0
LOC122272450 Ptep1.0/2.0 NW_024972039.1 558 2777 + uncharacterized LOC122272450 aug3.g8324 NA 1e-65
LOC122272449 Ptep1.0/2.0 NW_024972039.1 4514 5617 + zinc finger MYM-type protein 1-like aug3.g8324 NA 0
LOC107456117 Ptep1.0/2.0 NW_024972039.1 23801 41544 + cytochrome P450 4V2-like aug3.g8326 LOC107456117 0
LOC107456122 Ptep1.0/2.0 NW_024972039.1 50970 78331 + cytochrome P450 4C1-like aug3.g8327 LOC107456122 0
LOC107456121 Ptep1.0/2.0 NW_024972039.1 122660 144949 + cytochrome P450 4c3-like aug3.g8328 LOC107456121 0
LOC107456123 Ptep1.0/2.0 NW_024972039.1 152644 183591 + cytochrome P450 4V2-like aug3.g8329 LOC107456123 0
LOC122273330 Ptep1.0/2.0 NW_024975507.1 2004 4965 + uncharacterized LOC122273330 aug3.g8321 LOC107456112 0
19 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02