Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444846 Ptep1.0/2.0 NW_024969601.1 326856 331846 - gastrula zinc finger protein XlCGF26.1-like aug3.g845 LOC107444846 0
LOC107456292 Ptep1.0/2.0 NW_024969687.1 1762444 1765556 + histone deacetylase 6 aug3.g8459 LOC107456292 0
LOC107456288 Ptep1.0/2.0 NW_024969687.1 1771228 1793639 - isocitrate dehydrogenase [NADP] cytoplasmic aug3.g8458 LOC107456288 0
LOC107456289 Ptep1.0/2.0 NW_024969687.1 1787434 1878048 + transcription initiation factor TFIID subunit 8 aug3.g8457 LOC107456289 0
LOC107456291 Ptep1.0/2.0 NW_024969687.1 1881507 1884423 - protein pxr1-like aug3.g8456 LOC107456291 0
LOC107456296 Ptep1.0/2.0 NW_024969687.1 1885790 1902877 + SAP30-binding protein aug3.g8455 LOC107456296 0
LOC107456297 Ptep1.0/2.0 NW_024969687.1 1909050 1918436 + protein phosphatase inhibitor 2 aug3.g8453 LOC107456297 0
LOC107456285 Ptep1.0/2.0 NW_024969687.1 1921823 1929648 - spore coat protein YeeK-like aug3.g8452 LOC107456285 0
LOC107456283 Ptep1.0/2.0 NW_024969687.1 1937431 1940469 - uncharacterized histidine-rich protein DDB_G0274557-like aug3.g8451 LOC107456283 0
LOC107456281 Ptep1.0/2.0 NW_024969687.1 1948305 1961339 - histidine-rich glycoprotein-like aug3.g8450 LOC107456281 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02