Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444895 Ptep1.0/2.0 NW_024969969.1 250658 372273 - Down syndrome cell adhesion molecule aug3.g862,aug3.g24872 LOC107444895 0
LOC122269885 Ptep1.0/2.0 NW_024969969.1 324360 325938 - junctional adhesion molecule A-like aug3.g862 NA 8e-144
LOC107456501 Ptep1.0/2.0 NW_024970184.1 118972 138894 + uncharacterized LOC107456501 aug3.g8620 LOC107456501 0
LOC107456497 Ptep1.0/2.0 NW_024970184.1 140134 165790 - uncharacterized LOC107456497 aug3.g8621 LOC107456497 0
LOC107456506 Ptep1.0/2.0 NW_024970253.1 263882 337503 + uncharacterized LOC107456506 aug3.g8629 LOC107456506 0
LOC107456498 Ptep1.0/2.0 NW_024970276.1 610 22403 - putative protein tag-278 aug3.g8621 LOC107456498 0
LOC107456504 Ptep1.0/2.0 NW_024970276.1 22609 38094 + ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE aug3.g8622 LOC107439524,LOC107456504 0
LOC107456502 Ptep1.0/2.0 NW_024970276.1 50060 68814 + uncharacterized LOC107456502 aug3.g8623 LOC107456502 0
LOC107456499 Ptep1.0/2.0 NW_024970276.1 71866 120254 - microtubule-associated protein futsch aug3.g8625,aug3.g8624 LOC107456499 0
LOC107456500 Ptep1.0/2.0 NW_024970276.1 128469 136596 - cuticle protein 18.6-like aug3.g8626 LOC107456500 0
LOC107456505 Ptep1.0/2.0 NW_024970276.1 151248 337642 - semaphorin-1A aug3.g8627,aug3.g2766 LOC107456505 0
LOC122274043 Ptep1.0/2.0 NW_024988977.1 12 1579 - uncharacterized LOC122274043 aug3.g8627 LOC107456505 1e-110
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02