Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107456777 Ptep1.0/2.0 NW_024970043.1 148085 169070 - limulus clotting factor C aug3.g8819,aug3.g23266 LOC107456777 0
LOC122270085 Ptep1.0/2.0 NW_024970043.1 176137 192612 - uncharacterized LOC122270085 aug3.g8819 NA 2e-79
LOC107456773 Ptep1.0/2.0 NW_024970043.1 197264 203333 - protein FAM210B, mitochondrial aug3.g8818 LOC107456773 0
LOC107456774 Ptep1.0/2.0 NW_024970043.1 203761 211319 + mitochondrial import receptor subunit TOM22 homolog aug3.g8817 LOC107456774 0
LOC107456763 Ptep1.0/2.0 NW_024970043.1 212506 231753 - folliculin aug3.g8816 LOC107456763 0
LOC107456778 Ptep1.0/2.0 NW_024970043.1 235005 283653 + sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 aug3.g8815,aug3.g22329 LOC107456778 0
LOC107456779 Ptep1.0/2.0 NW_024970043.1 294850 307224 + clotting factor B aug3.g8814 LOC107456779 0
LOC107456767 Ptep1.0/2.0 NW_024970043.1 318953 324091 - high affinity copper uptake protein 1 aug3.g8813 LOC107456767 0
LOC107456780 Ptep1.0/2.0 NW_024970043.1 324279 325170 + ubiquitin-conjugating enzyme E2 G2 aug3.g8812 LOC107456780 0
LOC107438257 Ptep1.0/2.0 NW_024970043.1 337123 393189 + uncharacterized LOC107438257 aug3.g12943,aug3.g8811 LOC107438257 0
LOC107444944 Ptep1.0/2.0 NW_024971675.1 102106 115728 + syntaxin-18 aug3.g881 LOC107444944 0
LOC122273900 Ptep1.0/2.0 NW_024982939.1 707 2315 - clotting factor B-like aug3.g8814 LOC107456779 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02