Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268880 Ptep1.0/2.0 NW_024969600.1 7139 67037 + uncharacterized LOC122268880 aug3.g20419,aug3.g2618,aug3.g992,aug3.g9119,aug3.g22620,aug3.g13289 NA 0
LOC107457097 Ptep1.0/2.0 NW_024969920.1 2525708 2526037 - protein GVQW3-like aug3.g9110 LOC107457097 4e-173
LOC107445072 Ptep1.0/2.0 NW_024970501.1 105019 127520 - D-aminoacyl-tRNA deacylase 1 aug3.g911 LOC107445072 0
LOC107457141 Ptep1.0/2.0 NW_024970535.1 6154 79106 - protein capicua homolog aug3.g9111 LOC107457141 0
LOC107457142 Ptep1.0/2.0 NW_024970535.1 98412 110045 - dynactin subunit 1 aug3.g9112 LOC107457142 0
LOC107457139 Ptep1.0/2.0 NW_024970535.1 110177 139811 + uncharacterized LOC107457139 aug3.g9113,aug3.g9114 LOC107457139 0
LOC107457140 Ptep1.0/2.0 NW_024970535.1 154856 188055 + solute carrier family 22 member 8 aug3.g9116 LOC107457140 0
LOC107457143 Ptep1.0/2.0 NW_024970535.1 195430 199741 + cystatin-A2 aug3.g9117 LOC107457143 3e-178
LOC107443676 Ptep1.0/2.0 NW_024971301.1 1950 64733 + uncharacterized LOC107443676 aug3.g17394,aug3.g17395,aug3.g9111,aug3.g17393 LOC107443677,LOC107443678,LOC107443676 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02