Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107441141 Ptep1.0/2.0 NW_024969772.1 1201423 1208070 - homeobox protein Nkx-2.6 aug3.g9800 LOC107441141 0
LOC107441150 Ptep1.0/2.0 NW_024969772.1 1338141 1391601 + T-cell leukemia homeobox protein 1 aug3.g9802 LOC107441150 0
LOC107445244 Ptep1.0/2.0 NW_024969780.1 340310 350094 + RNA helicase aquarius aug3.g980 LOC107445244 0
LOC107438137 Ptep1.0/2.0 NW_024969793.1 699616 824568 + formin-J-like aug3.g26411,aug3.g15945,aug3.g16965,aug3.g18789,aug3.g3845,aug3.g20638,aug3.g27431,aug3.g11569,aug3.g26749,aug3.g13556,aug3.g568,aug3.g15812,aug3.g22828,aug3.g12149,aug3.g5637,aug3.g892,aug3.g8296,aug3.g18962,aug3.g6082,aug3.g24558,aug3.g9808,aug3.g2790,a LOC107438137 0
LOC107448815 Ptep1.0/2.0 NW_024970630.1 34913 42631 - cytochrome b5 aug3.g9803 LOC107448815 9e-151
LOC122271185 Ptep1.0/2.0 NW_024970630.1 42839 51016 + dynein axonemal assembly factor 4-like aug3.g9804 NA 1e-164
LOC107441204 Ptep1.0/2.0 NW_024970630.1 52449 57618 + dynein axonemal assembly factor 4 aug3.g9804 LOC107441204 0
LOC107441171 Ptep1.0/2.0 NW_024970630.1 57482 63119 - proliferating cell nuclear antigen aug3.g9805 LOC107441171 0
LOC107441221 Ptep1.0/2.0 NW_024970630.1 63371 87503 + GTP-binding protein SAR1b aug3.g9806 LOC107441221 0
LOC107441235 Ptep1.0/2.0 NW_024970630.1 89752 167230 - tyrosine kinase receptor Cad96Ca aug3.g9807 LOC107441235 0
LOC107441180 Ptep1.0/2.0 NW_024970630.1 182332 207691 + conserved oligomeric Golgi complex subunit 3 aug3.g9808 LOC107441180 0
LOC107441188 Ptep1.0/2.0 NW_024970630.1 207930 280827 - collagen alpha-3(IV) chain aug3.g9810,aug3.g9809 LOC107441188,LOC110283570 0
LOC122271848 Ptep1.0/2.0 NW_024971215.1 125704 126952 - RNA helicase aquarius-like aug3.g980 LOC107445244 0
LOC122273915 Ptep1.0/2.0 NW_024983222.1 1316 2213 - uncharacterized LOC122273915 aug3.g9806 NA 6e-72
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02