| Table S4.2. Cluster 2 markers identified in the first single-cell
RNA-seq analysis. |
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| Gene ID (NCBI) |
p_val |
avg_log2FC |
*pct.1 |
*pct.2 |
p_val_adj |
Gene ID (NCBI) |
Product (NCBI) |
aug3 gene model |
Gene name |
**Expression in RNAi embryos |
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| LOC107451809 |
1.31E-47 |
2.78767291 |
0.913 |
0.111 |
2.31E-43 |
LOC107451809 |
sonic hedgehog
protein-like |
aug3.g4322 |
Pt-hh |
hh5 - |
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fuchi3 - |
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| LOC107438641 |
5.30E-38 |
1.96252242 |
0.891 |
0.142 |
9.37E-34 |
LOC107438641 |
transcription
factor Sox-13, transcript variant X5 |
aug3.g13250 |
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| LOC107457189 |
5.98E-36 |
2.42653968 |
1 |
0.244 |
1.06E-31 |
LOC107457189 |
homeobox protein
OTX2-A-like |
aug3.g9172 |
Pt-otd (oc2) |
hh5 - |
ptc5 + |
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| LOC107451908 |
2.36E-27 |
1.49926982 |
0.478 |
0.039 |
4.16E-23 |
LOC107451908 |
uncharacterized
LOC107451908 |
aug3.g4396 |
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hh5 - |
ptc5 + |
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| LOC107444665 |
6.85E-21 |
0.9864488 |
0.587 |
0.094 |
1.21E-16 |
LOC107444665 |
nuclear receptor
subfamily 2 group E member 1-like |
aug3.g794 |
Pt-tll |
hh5 - |
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fuchi5 - |
| LOC107438011 |
1.15E-15 |
1.50019269 |
0.804 |
0.301 |
2.03E-11 |
LOC107438011 |
neurogenic locus
protein delta-like, transcript variant X1 |
aug3.g12734 |
Pt-Delta2 |
hh5 - |
ptc5 + |
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fuchi5 - |
| LOC107456634 |
2.81E-14 |
0.82706573 |
1 |
0.987 |
4.96E-10 |
LOC107456634 |
RNA
polymerase-associated protein CTR9 homolog |
aug3.g8712 |
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| LOC107453313 |
1.11E-13 |
1.24459289 |
0.87 |
0.449 |
1.95E-09 |
LOC107453313 |
protein naked
cuticle homolog 1 |
aug3.g5391 |
Pt-naked cuticle |
hh5 - |
ptc5 + |
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| LOC107453612 |
2.31E-13 |
1.76761156 |
0.696 |
0.259 |
4.08E-09 |
LOC107453612 |
protein
Wnt-8b-like, transcript variant X1 |
aug3.g5617 |
Pt-wnt8 |
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ptc5 - |
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fuchi5 - |
| LOC107452215 |
9.55E-13 |
1.337603 |
0.717 |
0.298 |
1.69E-08 |
LOC107452215 |
Krueppel-like
factor 7, transcript variant X1 |
aug3.g4601 |
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hh5 - |
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| LOC107444744 |
1.02E-12 |
0.50724998 |
0.261 |
0.026 |
1.80E-08 |
LOC107444744 |
transcription
factor SOX-8 |
aug3.g816 |
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hh5 - |
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msx6 - |
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| LOC107457313 |
1.46E-12 |
1.65698365 |
0.674 |
0.27 |
2.58E-08 |
LOC107457313 |
transcription
factor Sox-2 |
aug3.g11061 |
Pt-sox2-A |
hh5 - |
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msx6 - |
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| LOC107440157 |
4.34E-11 |
0.97199291 |
0.804 |
0.359 |
7.66E-07 |
LOC107440157 |
zinc finger
protein 423-like, transcript variant X3 |
aug3.g14296 |
Pt-znf423 |
hh5 - |
ptc5 + |
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| LOC107457180 |
2.03E-10 |
0.93683284 |
0.761 |
0.351 |
3.58E-06 |
LOC107457180 |
protein
jagged-1-like |
aug3.g9161 |
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hh5 - |
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| LOC107439618 |
3.23E-10 |
0.7224142 |
0.565 |
0.198 |
5.70E-06 |
LOC107439618 |
uncharacterized
LOC107439618, transcript variant X2 |
aug3.g13925 |
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hh5 - |
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| LOC107437681 |
1.17E-09 |
0.59689093 |
0.587 |
0.174 |
2.06E-05 |
LOC107437681 |
integrin
alpha-8-like |
aug3.g7077 |
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hh5 - |
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| LOC107456630 |
4.90E-09 |
0.33186794 |
0.283 |
0.05 |
8.65E-05 |
LOC107456630 |
intracellular
protein transport protein USO1-like |
aug3.g8711 |
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fuchi5 - |
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| LOC107454763 |
1.68E-08 |
0.34550355 |
0.261 |
0.046 |
2.97E-04 |
LOC107454763 |
F-box/LRR-repeat
protein 14-like |
aug3.g10819 |
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| LOC107455300 |
2.14E-08 |
0.63599271 |
0.565 |
0.19 |
3.77E-04 |
LOC107455300 |
silk gland
factor 1-like |
aug3.g6985 |
Pt-fkh |
hh5 - |
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fuchi5 - |
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| LOC107438758 |
8.31E-08 |
0.6729294 |
0.87 |
0.556 |
1.47E-03 |
LOC107438758 |
epidermal growth
factor receptor, transcript variant X2 |
aug3.g13345 |
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| LOC107436800 |
3.83E-07 |
0.80786841 |
0.565 |
0.257 |
6.77E-03 |
LOC107436800 |
uncharacterized
LOC107436800 |
aug3.g11835 |
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fuchi5 + |
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| *pct1 and pct2
mean proportion of cells that express the gene in this cluster and other
clusters, respectively. |
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| **hh5, hh pRNAi at late stage 5;
ptc5. ptc
pRNAi at late stage 5; msx6, msx1 pRNAi at stage 6;
fuchi3, fuchi pRNAi at stage 3;
fuchi5, fuchi pRNAi at stage 5; +, expression increase; -, expression
decrease |
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