| List of tables on | |||||||||
| Table ID | Reference/ Journal | Folder/File name (data table)/ Table title | Display | Download | Sample/ Stage | Experiment/ Method | Gene | Keys | |
|---|---|---|---|---|---|---|---|---|---|
| T0013 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS1_Statistics_of_the_first_single-cell_RNA-seq.xlsx Table S1. Statistics of the first single-cell RNA-seq experiment |
Display | Download | wild-type embryos st_5 |
single-cell RNA-seq of early embryos scRNAseq |
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| T0014 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS2_445_DEGs_btw_two_ectodermal_clusters_hyperlink.xlsx Table S2. 445 DEGs between two presumptive ectodermal clusters |
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single-cell RNA-seq of early embryos scRNAseq |
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| T0015 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS3_Cell_cycle_genes_hyperlink.xlsx Table S3. Cell cycle genes |
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single-cell RNA-seq of early embryos scRNAseq |
cell cycle genes | ||
| T0016 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx Table S4.0. Cluster 0 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-cell RNA-seq of early embryos scRNAseq_clustering |
cluster0 | ||
| T0017 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx Table S4.1. Cluster 1 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-cell RNA-seq of early embryos scRNAseq_clustering |
cluster1 | ||
| T0018 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx Table S4.2. Cluster 2 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
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single-cell RNA-seq of early embryos scRNAseq_clustering |
cluster2 | ||
| T0019 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx Table S4.3. Cluster 3 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
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single-cell RNA-seq of early embryos scRNAseq_clustering |
cluster3 | ||
| T0020 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx Table S4.4. Cluster 4 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-cell RNA-seq of early embryos scRNAseq_clustering |
cluster4 | ||
| T0021 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx Table S4.5. Cluster 5 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
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single-cell RNA-seq of early embryos scRNAseq_clustering |
cluster5 | ||
| T0022 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS5_Genes_expressed_specifically_in_CM_cells_hyperlink.xlsx Table S5. Genes expressed specifically in the CM cells |
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single-cell RNA-seq of early embryos scRNAseq_template-matching |
CM cell specific genes | ||
| T0023 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS6_Genes_with_similar_pattern_to_cumulus_UMAP_hyperlink.xlsx Table S6. Genes with highly similar pattern to LOC107444265 cumulus expression pattern on the UMAP plot |
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single-cell RNA-seq of early embryos scRNAseq_template-matching |
cumulus specific genes | ||
| T0024 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS7_Statistics_of_the_second_single-cell_and_-nucleus_RNA-seq.xlsx Table S7. Statistics of the second single-cell and the single-nucleus RNA-seq experiment |
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single-cell/nuc RNA-seq of early embryos single-cell/nuc-RNAseq |
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| T0025 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS8_85_DEGs_btw_two_ectodermal_clusters_hyperlink.xlsx Table S8. 85 DEGs between two presumptive ectodermal clusters |
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single-cell/nuc RNA-seq of early embryos single-cell/nuc-RNAseq |
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| T0026 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS9_Cluster_markers_single-nucleus_RNA-seq_hyperlink.xlsx Table S9.1. Cluster 6 markers identified in the single-nucleus RNA-seq analysis |
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single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster6 | ||
| T0027 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS9_Cluster_markers_single-nucleus_RNA-seq_hyperlink.xlsx Table S9.2. Cluster 9 markers identified in the single-nucleus RNA-seq analysis |
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single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster9 | ||
| T0028 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/TableS10_Clones_hyperlink.xlsx Table S10. Clones |
Display | Download | primers_clones na |
na PCR_EST_cloning |
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| T0029 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.1 Cluster 0 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster0 | ||
| T0030 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.2 Cluster 1 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster1 | ||
| T0031 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.3 Cluster 2 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
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single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster2 | ||
| T0032 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.4 Cluster 3 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster3 | ||
| T0033 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.5 Cluster 4 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster4 | ||
| T0034 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.6 Cluster 5 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster5 | ||
| T0035 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.7 Cluster 6 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster6 | ||
| T0036 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.8 Cluster 7 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
Display | Download | wild-type embryos st_5 |
single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster7 | ||
| T0037 | Akiyama-Oda et al. (2022) Front CDB |
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx RelatedData1.9 Cluster 8 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5 |
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single-nuc RNA-seq of early embryos single-nuc-RNAseq_clustering |
cluster8 | ||