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Table
ID
Reference/
Journal
Folder/File name (data table)/
Table title
DisplayDownloadSample/
Stage
Experiment/
Method
GeneKeys
T0013 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS1_Statistics_of_the_first_single-cell_RNA-seq.xlsx
Table S1. Statistics of the first single-cell RNA-seq experiment
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st_5
single-cell RNA-seq of early embryos
scRNAseq
T0014 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS2_445_DEGs_btw_two_ectodermal_clusters_hyperlink.xlsx
Table S2. 445 DEGs between two presumptive ectodermal clusters
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st_5
single-cell RNA-seq of early embryos
scRNAseq
T0015 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS3_Cell_cycle_genes_hyperlink.xlsx
Table S3. Cell cycle genes
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st_5
single-cell RNA-seq of early embryos
scRNAseq
cell cycle genes
T0016 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx
Table S4.0. Cluster 0 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-cell RNA-seq of early embryos
scRNAseq_clustering
cluster0
T0017 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx
Table S4.1. Cluster 1 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-cell RNA-seq of early embryos
scRNAseq_clustering
cluster1
T0018 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx
Table S4.2. Cluster 2 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-cell RNA-seq of early embryos
scRNAseq_clustering
cluster2
T0019 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx
Table S4.3. Cluster 3 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-cell RNA-seq of early embryos
scRNAseq_clustering
cluster3
T0020 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx
Table S4.4. Cluster 4 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-cell RNA-seq of early embryos
scRNAseq_clustering
cluster4
T0021 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS4_Cluster_markers_first_single-cell_RNA-seq_hyperlink.xlsx
Table S4.5. Cluster 5 markers identified in the first single-cell RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-cell RNA-seq of early embryos
scRNAseq_clustering
cluster5
T0022 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS5_Genes_expressed_specifically_in_CM_cells_hyperlink.xlsx
Table S5. Genes expressed specifically in the CM cells
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st_5
single-cell RNA-seq of early embryos
scRNAseq_template-matching
CM cell specific genes
T0023 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS6_Genes_with_similar_pattern_to_cumulus_UMAP_hyperlink.xlsx
Table S6. Genes with highly similar pattern to LOC107444265 cumulus expression pattern on the UMAP plot
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st_5
single-cell RNA-seq of early embryos
scRNAseq_template-matching
cumulus specific genes
T0024 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS7_Statistics_of_the_second_single-cell_and_-nucleus_RNA-seq.xlsx
Table S7. Statistics of the second single-cell and the single-nucleus RNA-seq experiment
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st_5
single-cell/nuc RNA-seq of early embryos
single-cell/nuc-RNAseq
T0025 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS8_85_DEGs_btw_two_ectodermal_clusters_hyperlink.xlsx
Table S8. 85 DEGs between two presumptive ectodermal clusters
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st_5
single-cell/nuc RNA-seq of early embryos
single-cell/nuc-RNAseq
T0026 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS9_Cluster_markers_single-nucleus_RNA-seq_hyperlink.xlsx
Table S9.1. Cluster 6 markers identified in the single-nucleus RNA-seq analysis
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster6
T0027 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS9_Cluster_markers_single-nucleus_RNA-seq_hyperlink.xlsx
Table S9.2. Cluster 9 markers identified in the single-nucleus RNA-seq analysis
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster9
T0028 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/TableS10_Clones_hyperlink.xlsx
Table S10. Clones
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na
na
PCR_EST_cloning
T0029 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.1 Cluster 0 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster0
T0030 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.2 Cluster 1 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster1
T0031 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.3 Cluster 2 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster2
T0032 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.4 Cluster 3 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster3
T0033 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.5 Cluster 4 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster4
T0034 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.6 Cluster 5 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster5
T0035 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.7 Cluster 6 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster6
T0036 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.8 Cluster 7 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster7
T0037 Akiyama-Oda et al. (2022)
Front CDB
2022FrontCDB/RelatedData1_cluster.markers220620Nuc5lA02_1-42-0.5.xlsx
RelatedData1.9 Cluster 8 markers identified in single-nucleus RNA-seq analysis of P. tepidariorum embryos at late stage 5
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st_5
single-nuc RNA-seq of early embryos
single-nuc-RNAseq_clustering
cluster8
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Last updated by hiroki oda, 2020.9.10